Advocacy
> Commentary Snap Freezing Lymphoid Tissue
Last update: 11/01/2007
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Before
you have the biopsy to determine if you have a lymphoma or to evaluate
tissue to see if you've had a relapse, contact your surgeon or
oncologist and specify that you want a portion of the extra tissue snap
frozen using CLIA
standards.
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to
determine if you are eligible for a clinical trial (now or
in the future)
testing an agent that targets a pathway that might be present in
the tumor) |
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to produce
a patient-specific cancer vaccine, should one of the
three
vaccines coming up for approval within the year wins approval. |
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to do advanced
diagnostics, to determine if you have high or low risk
lymphoma
(or as control tissue if negative for lymphoma!) |
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to
determine your eligibility to use approved targeted agents
in future. |
WHERE / HOW can I have this done?
 | One way: Participate
in the Genome Expression Study
(highly recommended when it's time for a biopsy)
Rationale: The observed variability in the clinical course of
follicular lymphoma, along with
the diverse range of therapeutic options available, necessitates
accurate prognostic
stratification of the individual patient.
Conditions: Lymphoma; Leukemia; Multiple
Myeloma; Lymphoid Malignancies
Locations:
Nebraska Medical Center in Omaha,
Southwest Oncology Group centers- see for MANY centers
in USA: swog.org
the British Columbia Cancer Agency in Vancouver,
Canada;
the Norwegian Radium Hospital in Oslo, Norway;
the University of Würzburg in Würzburg, Germany;
the University of Barcelona in Barcelona, Spain; and
St. Bartholomew's Hospital in London, England.
Background: NCI investigators
are working with researchers at the University of Nebraska Medical
Center in Omaha
to define the gene expression
profiles of all types of human lymphoid malignancies.
The project is supported by an international collaboration ...
The LLMPP uses
"Lymphochip" cDNA (complementary DNA) microarrays, which
are enriched in genes
that are expressed in and/or function in lymphocytes. Lymphochip
microarrays allow
measurement of the RNA expression levels of the represented genes.
Gene expression
profiles developed as a result of this project may someday be used
for disease classification
(diagnosis), prognosis, and therapy selection. Already,
results from the LLMPP indicate
that these profiles can improve diagnostic accuracy and provide
prognostic information.
The LLMPP is initiating a multicenter clinical trial to evaluate a
lymphoma diagnostic chip,
called LymphDX, which was designed by the company Affymetrix in
collaboration with
NCI researchers using LLMPP data. The study will demonstrate the
feasibility of
disseminating the LymphDX microarray technology to all of the
participating sites and
will also evaluate the diagnostic utility of the LymphDX chip in a
prospective study.
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IMPORTANT: Be sure to
request a CLIA Certified Laboratory -
"defined as clinical diagnostic laboratories certified by the
DHHS Health Care Financing Administration ... as revised by the
Clinical Laboratory Improvement Amendments (CLIA)". http://ohsr.od.nih.gov/info/sheet17.html
Also see Rationale,
below.

For
centers that are more likely to snap freeze tissue at biopsy:
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 | SWOG centers in USA: swog.org
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 | Locate CLIA accredited laboratories by state: cms.hhs.gov
pdf
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 | Locations participating in LLMPP:
Nebraska Medical Center in Omaha,
Southwest Oncology Group centers- see for MANY centers
in USA: swog.org
the British Columbia Cancer Agency in Vancouver,
Canada;
the Norwegian Radium Hospital in Oslo, Norway;
the University of Würzburg in Würzburg, Germany;
the University of Barcelona in Barcelona, Spain;
St. Bartholomew's Hospital in London, England.
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Send
comments by clicking here

Objectives
 | Advocate for the routine snap freezing of
lymphoid tissue at each patient biopsy.
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Provide the rationale and notification of expectation to:
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treating physicians who refer patients for
biopsies, |
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clinical investigators
and scientists
who can advise us about where to put our efforts. |
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cancer centers that must store the tissue,
or package and ship the tissue elsewhere, |
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surgeons who perform the procedures, |
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pathologists
who first receive the tissue, |
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and the public who must inquire and know
what to ask for when scheduled for lymphoid tissue biopsies. |
We will develop and distribute educational material so that the public and our representatives
can understand the potential of this technology and the need to
fund and support it.
 | Identify research centers that will receive the tissue, or perform genetic
testing on it.
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 | Identify methods to safeguard the privacy of
patients who donate lymphoid tissue and provide clinical history.
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 | Identify and provide incentives for patients to
donate lymphoid tissue and provide clinical history.
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 | Advocate for the creation of a centralized lymphoid tissue data bank at the NCI that will receive and evaluate tissue from outside sources.
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 | Advocate for open access to tissue and related data
to help advance clinical progress. |

Rationale
The reasons to routinely snap freeze and store
lymphoid tissue at biopsies so that the tissue can be profiled
at a genetic level are numerous and compelling:
 | Enables scientist to more rapidly identify the
gene expressions that distinguish normal from malignant cells and
assist in the "development of molecularly targeted therapies
that have specificity and potency for defined cancer types." 4
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 | Enables scientists to link clinical behavior (how
aggressive or indolent the cancer is likely to be ) to gene
expression, and thus better advise patients about treatment
selection and timing. Currently, the variable clinical course of
patients given the same diagnosis stems, in part, from the
underlying molecular diversity among their tumors. 4
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 | Enables identification of viral factors that may be present and may contribute to causing, promoting, or maintaining malignant behavior of lymphoma cells.
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 | Enables scientists to discover how genes function
in immune cells and apply to the treatment of numerous diseases.
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 | Enables retrospective testing to correlate genetic expression with individual responses to treatments. The potential benefits
will enable doctors or researchers to:
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 | Multiple samples from the same patient,
 | enable the identification of changes to gene
expression and other tumor characteristics in response to treatments and over time. |
 | enable the identification of changes to gene
expression and other tumor characteristics that correlate to refractory disease, or transformation to aggressive disease, or the lack thereof.
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 | Enable identification of tumor-associated antigens that can form the basis for therapeutic cancer
vaccines.
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 | Enable discovery of cells in the lymphoid microenvironment
that may be promoting or inhibiting lymphomas.
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 | Enable production of patient-specific therapeutics, such as cancer
vaccines or therapeutic antibodies. |
“The inadequacy of the current diagnostic methods is evident in the heterogeneous treatment responses of cancer patients within a diagnostic category. The importance
of establishing a new molecular diagnosis of cancer is two fold. First, the assignment of cancer patients to molecularly diagnostic categories will often provide prognostic information that can guide patients to the most appropriate treatments.
Second, a molecular diagnosis of cancer provides a detailed blue print
of the abnormal molecular circuitry of the cancer cell, which
will lead to the development of molecularly targeted therapies
that have specificity and potency for defined cancer types.” – Louis M. Staudt, Annu.Rev.Med.2002.53:303–18

Snap-freezing of lymphoid tissue at biopsies
At the time of
biopsy
a portion of the tumor removed by surgery – not used for histology
testing – can be snap frozen in liquid nitrogen and stored at -80 C degrees for later processing (DNA or RNA extraction).
Storing the material is very simple. It only takes a few seconds or minutes. In short, it is required to have liquid nitrogen at the local were the biopsy is being done. All hospitals have liquid nitrogen, which is not expensive.
Immediately after removing the tissue, it has to be introduced into a tube and then into liquid nitrogen. After that the tubes can be securely transported to an -80 C degrees
freezer. We estimate that the cost of the initial storing of the material in the freezer will be
modest.
IMPORTANT: Be sure to request a “CLIA
Certified Laboratories” - "defined as clinical diagnostic
laboratories certified by the DHHS Health Care Financing
Administration ... as revised by the Clinical Laboratory Improvement
Amendments (CLIA)". http://ohsr.od.nih.gov/info/sheet17.html

Notification of Expectation
For Patients: How to inquire and what to ask for when scheduled for lymphoid tissue
biopsies.
"Is this a
"If so, I would like to have the lymphoid tissue taken at my biopsy snap frozen so that DNA analysis can be done, and so that I have the option to use a portion of it for therapeutic purposes in future, such as
identifying molecular targets that may be targeted by recently
approved or investigational therapies, or for making a tumor-specific cancer vaccine.
For Treating Physicians, Surgeons, and Hospital
Centers
We believe that the benefits of participating in this program will far exceed the costs, which we estimate to be approximately
$?? per patient. Costs are probably modest and relate to storage
and supervision of tissue.
History tells us that difficult problems can only be solved
only by taking proactive steps, and by coordinating our efforts.
The potential benefits of this program are twofold: It can potentially help patients living with the disease today, and
it will help future patients by assisting in advancing the science.
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References:
[2] Specific Gene Patterns Linked to
Treatment with EGFR Drugs, Cedars-Sinai Medical Center 3-Jun-03
- Abstract 763, ASCO
[3] Clinical translation of gene
expression profiling in lymphomas and leukemias. Semin Oncol. 2002
Jun;29(3):258-63. Review. PMID: 12063678 - PubMed
[4] Staudt, Gene Expression
Profiling of Lymphoid Malignancies -
Annu.Rev.Med.2002.53:303–18 - PubMed

Resources:
 | Molecular Targeting in the Treatment of Cancer: An Interview With Brian Druker, MD -
Medscape (free login req.)
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 | Molecular Diagnosis
of the Hematologic Cancers, Staudt - NEJM
May 1, 2003
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Hematological Tumor Profiling, Kris Novak, PhD Clinical Editor: Sara M Mariani, MD, PhD
- Medscape
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Clinical pharmacology
- mja.com.au
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DNA arrays diagnose, predict survival for Sezary syndrome cancer patients -
New technology validated, dozens of potential drug targets identified -
Eurekalert.org
Jun_03
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Bioinformatics and microarray gene expression profiles -
PDF
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Application of tissue microarray technology to
the study of non-Hodgkin's and Hodgkin's lymphoma. Hum Pathol.
2002 Oct;33(10):968-974. PMID: 12395368 - PubMed
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Drug response linked to genes in lymphoma patients - GNN
2_21_03
"The researchers identified about 150 genes in lymph tumors that could help predict the drug response. The activity of these genes differed significantly between patients who responded to treatment and those who did not.
"
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Gene profiles predict survival - NCS
Infoservices, 04_02
The activity of as few as 17 genes can be used to predict lymphoma patients' response to treatment, scientists reported at the 18th UICC International Cancer Congress in Oslo this week.
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Recommendations for the Reporting of Lymphoid Neoplasms -
Medscape (free login req.)
A checklist for pathologists and surgeons on how to evaluate and store lymphoid tissue at biopsy.
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